Sevir.3G358200.1

Description : elongation factor Ts family protein

Gene families : OG_01_0007515 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007515_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.3G358200.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.3G358200.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_151
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_108

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003746	translation elongation factor activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006414	translational elongation	ISM	GOs from InterProScan
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001816	Transl_elong_EFTs/EF1B	TIGRFAM	792	892
IPR001816	Transl_elong_EFTs/EF1B	TIGRFAM	550	645
IPR001816	Transl_elong_EFTs/EF1B	TIGRFAM	640	763
IPR001816	Transl_elong_EFTs/EF1B	Hamap	550	763
IPR014039	Transl_elong_EFTs/EF1B_dimer	Pfam	604	746
IPR014039	Transl_elong_EFTs/EF1B_dimer	Pfam	846	987
IPR009060	UBA-like_sf	SUPERFAMILY	793	844
IPR001816	Transl_elong_EFTs/EF1B	PANTHER	298	767
IPR001816	Transl_elong_EFTs/EF1B	PANTHER	792	987
IPR001816	Transl_elong_EFTs/EF1B	PANTHER	102	285
IPR003029	S1_domain	ProSiteProfiles	148	217
IPR018101	Transl_elong_Ts_CS	ProSitePatterns	560	575
IPR001816	Transl_elong_EFTs/EF1B	Hamap	792	988
IPR003029	S1_domain	Pfam	264	326
IPR003029	S1_domain	Pfam	148	217
IPR003029	S1_domain	ProSiteProfiles	267	335
IPR036402	EF-Ts_dimer_sf	SUPERFAMILY	605	746
IPR018101	Transl_elong_Ts_CS	ProSitePatterns	865	875
IPR018101	Transl_elong_Ts_CS	ProSitePatterns	801	816
IPR036402	EF-Ts_dimer_sf	Gene3D	608	745
IPR009060	UBA-like_sf	SUPERFAMILY	552	603
IPR036402	EF-Ts_dimer_sf	SUPERFAMILY	846	987
IPR036402	EF-Ts_dimer_sf	Gene3D	849	986
IPR012340	NA-bd_OB-fold	SUPERFAMILY	251	342
IPR012340	NA-bd_OB-fold	SUPERFAMILY	139	218
IPR018101	Transl_elong_Ts_CS	ProSitePatterns	624	634

No CAZYmes available for this sequence

External Links

No external refs found!