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  5. Sevir.3G361900.1

Sevir.3G361900.1


Description : dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative


Gene families : OG_01_0001889 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001889_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.3G361900.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.3G361900.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_23
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_53


Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity ISM GOs from InterProScan
MF GO:0003855 3-dehydroquinate dehydratase activity ISM GOs from InterProScan
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity ISM GOs from InterProScan
BP GO:0019632 shikimate metabolic process ISM GOs from InterProScan
MF GO:0050661 NADP binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001381 DHquinase_I CDD 23 248
IPR001381 DHquinase_I TIGRFAM 24 245
IPR022893 Shikimate_DH_fam Hamap 255 528
IPR006151 Shikm_DH/Glu-tRNA_Rdtase Pfam 377 448
IPR001381 DHquinase_I Pfam 25 246
IPR041121 SDH_C Pfam 497 523
IPR036291 NAD(P)-bd_dom_sf SUPERFAMILY 366 525
IPR013785 Aldolase_TIM Gene3D 7 250
IPR001381 DHquinase_I Hamap 23 249
IPR011342 Shikimate_DH TIGRFAM 256 521
IPR022893 Shikimate_DH_fam PANTHER 18 516
IPR013708 Shikimate_DH-bd_N Pfam 260 339

No CAZYmes available for this sequence

No external refs found!