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  5. Sevir.3G365500.1

Sevir.3G365500.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0015124 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015124_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.3G365500.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.3G365500.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_207
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_34


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 251 294
IPR002885 Pentatricopeptide_rpt Pfam 185 214
IPR002885 Pentatricopeptide_rpt Pfam 222 247
IPR002885 Pentatricopeptide_rpt Pfam 397 423
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 252 286
IPR002885 Pentatricopeptide_rpt TIGRFAM 397 427
IPR002885 Pentatricopeptide_rpt TIGRFAM 254 288
IPR002885 Pentatricopeptide_rpt TIGRFAM 186 214
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 392 426
IPR011990 TPR-like_helical_dom_sf Gene3D 95 244
IPR011990 TPR-like_helical_dom_sf Gene3D 320 476
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 183 217
IPR011990 TPR-like_helical_dom_sf Gene3D 247 319

No CAZYmes available for this sequence

No external refs found!