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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0008924 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008924_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.1G118800.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.1G118800.1 | |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_7 | |
| Cluster | Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_16 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 306 | 340 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 235 | 281 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 306 | 354 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 201 | 235 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 236 | 270 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 490 | 524 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 414 | 448 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 376 | 446 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 271 | 305 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 564 | 592 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 172 | 198 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 418 | 445 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 459 | 488 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 492 | 520 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 217 | 375 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 166 | 200 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 568 | 736 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 308 | 341 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 204 | 236 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 459 | 488 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 418 | 446 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 239 | 272 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 274 | 306 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 341 | 376 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 72 | 216 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 451 | 546 |
No CAZYmes available for this sequence
| No external refs found! |