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Description : pumilio 7
Gene families : OG_01_0008611 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008611_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.3G377400.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.3G377400.1 | |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_55 | |
| Cluster | Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_63 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR033712 | Pumilio_RNA-bd | CDD | 173 | 474 |
| IPR016024 | ARM-type_fold | SUPERFAMILY | 162 | 477 |
| IPR011989 | ARM-like | Gene3D | 153 | 480 |
| IPR033133 | PUM-HD | ProSiteProfiles | 138 | 482 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 383 | 419 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 199 | 235 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 275 | 310 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 347 | 382 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 244 | 276 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 388 | 421 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 170 | 190 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 203 | 233 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 353 | 370 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 280 | 310 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 315 | 348 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 238 | 274 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 164 | 198 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 421 | 456 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 383 | 418 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 275 | 310 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 199 | 234 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 347 | 382 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 311 | 346 |
No CAZYmes available for this sequence
| No external refs found! |