Sevir.3G392100.1

Description : Pyridoxal-dependent decarboxylase family protein

Gene families : OG_01_0005163 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005163_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.3G392100.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.3G392100.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_139
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_130

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	ISM	GOs from InterProScan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006553	lysine metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008652	amino acid biosynthetic process	None	Extended
MF	GO:0008836	diaminopimelate decarboxylase activity	ISM	GOs from InterProScan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009066	aspartate family amino acid metabolic process	None	Extended
BP	GO:0009067	aspartate family amino acid biosynthetic process	None	Extended
BP	GO:0009085	lysine biosynthetic process	None	Extended
BP	GO:0009089	lysine biosynthetic process via diaminopimelate	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
MF	GO:0016831	carboxy-lyase activity	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0043648	dicarboxylic acid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0046451	diaminopimelate metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended
BP	GO:1901607	alpha-amino acid biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR022657	De-COase2_CS	ProSitePatterns	298	313
IPR009006	Ala_racemase/Decarboxylase_C	Gene3D	93	485
IPR002986	DAP_deCOOHase_LysA	Hamap	86	489
IPR002986	DAP_deCOOHase_LysA	TIGRFAM	78	485
IPR022643	De-COase2_C	Pfam	105	445
IPR002986	DAP_deCOOHase_LysA	PRINTS	455	477
IPR002986	DAP_deCOOHase_LysA	PRINTS	372	390
IPR002986	DAP_deCOOHase_LysA	PRINTS	235	244
IPR002986	DAP_deCOOHase_LysA	PRINTS	147	164
IPR000183	Orn/DAP/Arg_de-COase	PRINTS	149	161
IPR000183	Orn/DAP/Arg_de-COase	PRINTS	129	147
IPR000183	Orn/DAP/Arg_de-COase	PRINTS	344	363
IPR000183	Orn/DAP/Arg_de-COase	PRINTS	445	458
IPR000183	Orn/DAP/Arg_de-COase	PRINTS	262	275
IPR009006	Ala_racemase/Decarboxylase_C	SUPERFAMILY	329	486
IPR022644	De-COase2_N	Pfam	108	354
IPR022653	De-COase2_pyr-phos_BS	ProSitePatterns	129	147
IPR029066	PLP-binding_barrel	SUPERFAMILY	99	355
IPR002986	DAP_deCOOHase_LysA	CDD	99	466
IPR029066	PLP-binding_barrel	Gene3D	106	349

No CAZYmes available for this sequence

External Links

No external refs found!

Sevir.3G392100.1

Expression Profile

Co-expression Networks

Functional Annotation