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  5. Sevir.3G401000.2

Sevir.3G401000.2


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0013414 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013414_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.3G401000.2 No neighbors in network
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.3G401000.2
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_115


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0009451 RNA modification ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 522 556
IPR045215 PPR_prot_At1g15510 PANTHER 327 391
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 204 234
IPR045215 PPR_prot_At1g15510 PANTHER 376 450
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 359 389
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 142 176
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 297 331
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 235 269
IPR011990 TPR-like_helical_dom_sf Gene3D 569 698
IPR045215 PPR_prot_At1g15510 PANTHER 9 252
IPR011990 TPR-like_helical_dom_sf Gene3D 9 109
IPR011990 TPR-like_helical_dom_sf Gene3D 110 187
IPR011990 TPR-like_helical_dom_sf Gene3D 474 568
IPR011990 TPR-like_helical_dom_sf Gene3D 188 265
IPR011990 TPR-like_helical_dom_sf Gene3D 390 473
IPR011990 TPR-like_helical_dom_sf Gene3D 328 389
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 110 140
IPR002885 Pentatricopeptide_rpt Pfam 50 78
IPR002885 Pentatricopeptide_rpt Pfam 392 421
IPR002885 Pentatricopeptide_rpt Pfam 81 109
IPR002885 Pentatricopeptide_rpt Pfam 112 142
IPR002885 Pentatricopeptide_rpt Pfam 361 386
IPR002885 Pentatricopeptide_rpt Pfam 206 231
IPR002885 Pentatricopeptide_rpt Pfam 597 621
IPR002885 Pentatricopeptide_rpt Pfam 299 325
IPR002885 Pentatricopeptide_rpt Pfam 333 355
IPR002885 Pentatricopeptide_rpt Pfam 145 169
IPR002885 Pentatricopeptide_rpt Pfam 175 204
IPR002885 Pentatricopeptide_rpt Pfam 423 451
IPR045215 PPR_prot_At1g15510 PANTHER 452 698
IPR045215 PPR_prot_At1g15510 PANTHER 249 326
IPR011990 TPR-like_helical_dom_sf Gene3D 266 327
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 233 682
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 390 424
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 48 82
IPR002885 Pentatricopeptide_rpt Pfam 265 297
IPR002885 Pentatricopeptide_rpt Pfam 521 569
IPR002885 Pentatricopeptide_rpt TIGRFAM 145 169
IPR002885 Pentatricopeptide_rpt TIGRFAM 423 450
IPR002885 Pentatricopeptide_rpt TIGRFAM 268 296
IPR002885 Pentatricopeptide_rpt TIGRFAM 392 420
IPR002885 Pentatricopeptide_rpt TIGRFAM 112 142
IPR002885 Pentatricopeptide_rpt TIGRFAM 563 591
IPR002885 Pentatricopeptide_rpt TIGRFAM 299 324
IPR002885 Pentatricopeptide_rpt TIGRFAM 175 206
IPR002885 Pentatricopeptide_rpt TIGRFAM 237 268
IPR002885 Pentatricopeptide_rpt TIGRFAM 81 109
IPR002885 Pentatricopeptide_rpt TIGRFAM 50 78
IPR002885 Pentatricopeptide_rpt TIGRFAM 524 558
IPR002885 Pentatricopeptide_rpt TIGRFAM 361 387
IPR002885 Pentatricopeptide_rpt TIGRFAM 496 524
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 48 163
IPR002885 Pentatricopeptide_rpt Pfam 233 262
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 491 521

No CAZYmes available for this sequence

No external refs found!