Sevir.4G030000.2

Description : 1-deoxy-D-xylulose 5-phosphate synthase 3

Gene families : OG_01_0002268 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002268_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.4G030000.2
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.4G030000.2
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_65
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_7

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	ISM	GOs from InterProScan
MF	GO:0003954	NADH dehydrogenase activity	None	Extended
MF	GO:0003955	NAD(P)H dehydrogenase (quinone) activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006720	isoprenoid metabolic process	None	Extended
BP	GO:0006721	terpenoid metabolic process	None	Extended
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008299	isoprenoid biosynthetic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
MF	GO:0008661	1-deoxy-D-xylulose-5-phosphate synthase activity	ISM	GOs from InterProScan
MF	GO:0009055	electron transfer activity	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0015453	oxidoreduction-driven active transmembrane transporter activity	None	Extended
BP	GO:0016114	terpenoid biosynthetic process	ISM	GOs from InterProScan
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	None	Extended
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016744	transketolase or transaldolase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
MF	GO:0050136	NADH dehydrogenase (quinone) activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR005477	Dxylulose-5-P_synthase	PANTHER	32	673
IPR005475	Transketolase-like_Pyr-bd	Pfam	403	562
IPR009014	Transketo_C/PFOR_II	SUPERFAMILY	575	668
IPR037232	NADH_quin_OxRdtase_su_C/D-like	Gene3D	681	733
IPR037232	NADH_quin_OxRdtase_su_C/D-like	SUPERFAMILY	685	756
IPR005477	Dxylulose-5-P_synthase	CDD	119	363
IPR009014	Transketo_C/PFOR_II	Gene3D	575	680
IPR029061	THDP-binding	SUPERFAMILY	380	563
IPR029061	THDP-binding	SUPERFAMILY	76	463
IPR005475	Transketolase-like_Pyr-bd	SMART	401	566
IPR005477	Dxylulose-5-P_synthase	TIGRFAM	81	663
IPR033248	Transketolase_C	Pfam	579	666
IPR005477	Dxylulose-5-P_synthase	Pfam	79	363
IPR001268	NADH_UbQ_OxRdtase_30kDa_su	Pfam	687	751

No CAZYmes available for this sequence

External Links

No external refs found!

Sevir.4G030000.2

Expression Profile

Co-expression Networks

Functional Annotation