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  5. ChrSy.fgenesh.mRNA.34

ChrSy.fgenesh.mRNA.34


No description available


Gene families : OG_01_0000005 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000005_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): ChrSy.fgenesh.mRNA.34
Neighborhood Oryza sativa coexpression network - Wang et al (2014): ChrSy.fgenesh.mRNA.34
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_182
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_66


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0004190 aspartic-type endopeptidase activity ISM GOs from InterProScan
BP GO:0006508 proteolysis ISM GOs from InterProScan
BP GO:0015074 DNA integration ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036397 RNaseH_sf Gene3D 749 953
IPR043502 DNA/RNA_pol_sf SUPERFAMILY 184 580
IPR021109 Peptidase_aspartic_dom_sf SUPERFAMILY 30 131
IPR041588 Integrase_H2C2 Pfam 684 741
IPR001584 Integrase_cat-core Pfam 765 856
IPR041373 RT_RNaseH Pfam 475 574
IPR012337 RNaseH-like_sf SUPERFAMILY 752 911
IPR043128 Rev_trsase/Diguanyl_cyclase Gene3D 285 417
IPR021109 Peptidase_aspartic_dom_sf Gene3D 25 148
IPR001584 Integrase_cat-core ProSiteProfiles 752 915
IPR001969 Aspartic_peptidase_AS ProSitePatterns 44 55
IPR000477 RT_dom ProSiteProfiles 241 420
IPR000477 RT_dom Pfam 261 419
IPR043128 Rev_trsase/Diguanyl_cyclase Gene3D 418 489
IPR016197 Chromo-like_dom_sf SUPERFAMILY 1023 1102

No CAZYmes available for this sequence

No external refs found!