ChrUn.fgenesh.mRNA.12

Description : DNA/RNA polymerases superfamily protein

Gene families : OG_01_0000005 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000005_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): ChrUn.fgenesh.mRNA.12
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): ChrUn.fgenesh.mRNA.12
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_43
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_16

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004190	aspartic-type endopeptidase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006508	proteolysis	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	ISM	GOs from InterProScan
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0070001	aspartic-type peptidase activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR043128	Rev_trsase/Diguanyl_cyclase	Gene3D	923	1058
IPR000477	RT_dom	Pfam	899	1057
IPR000477	RT_dom	ProSiteProfiles	879	1058
IPR001878	Znf_CCHC	SMART	628	644
IPR012337	RNaseH-like_sf	SUPERFAMILY	1423	1583
IPR043128	Rev_trsase/Diguanyl_cyclase	Gene3D	1068	1158
IPR041373	RT_RNaseH	Pfam	1146	1245
IPR005162	Retrotrans_gag_dom	Pfam	411	506
IPR001878	Znf_CCHC	ProSiteProfiles	629	644
IPR041588	Integrase_H2C2	Pfam	1356	1412
IPR001584	Integrase_cat-core	ProSiteProfiles	1419	1586
IPR021109	Peptidase_aspartic_dom_sf	SUPERFAMILY	678	782
IPR001969	Aspartic_peptidase_AS	ProSitePatterns	696	707
IPR016197	Chromo-like_dom_sf	SUPERFAMILY	1695	1774
IPR036397	RNaseH_sf	Gene3D	1421	1617
IPR043502	DNA/RNA_pol_sf	SUPERFAMILY	822	1251
IPR021109	Peptidase_aspartic_dom_sf	Gene3D	669	799
IPR036875	Znf_CCHC_sf	SUPERFAMILY	615	651

No CAZYmes available for this sequence

External Links

No external refs found!

ChrUn.fgenesh.mRNA.12

Expression Profile

Co-expression Networks

Functional Annotation