ChrUn.fgenesh.mRNA.51

Description : DNA/RNA polymerases superfamily protein

Gene families : OG_01_0000005 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000005_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): ChrUn.fgenesh.mRNA.51
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): ChrUn.fgenesh.mRNA.51
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_214
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_16

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	ISM	GOs from InterProScan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR000477	RT_dom	Pfam	877	1035
IPR043502	DNA/RNA_pol_sf	SUPERFAMILY	800	1229
IPR043128	Rev_trsase/Diguanyl_cyclase	Gene3D	901	1036
IPR001878	Znf_CCHC	SMART	608	624
IPR041588	Integrase_H2C2	Pfam	1333	1390
IPR036875	Znf_CCHC_sf	SUPERFAMILY	595	628
IPR001878	Znf_CCHC	ProSiteProfiles	609	624
IPR043128	Rev_trsase/Diguanyl_cyclase	Gene3D	1047	1137
IPR012337	RNaseH-like_sf	SUPERFAMILY	1402	1561
IPR001878	Znf_CCHC	Pfam	608	624
IPR000477	RT_dom	ProSiteProfiles	857	1036
IPR001584	Integrase_cat-core	ProSiteProfiles	1401	1564
IPR005162	Retrotrans_gag_dom	Pfam	400	497
IPR036397	RNaseH_sf	Gene3D	1398	1603
IPR041373	RT_RNaseH	Pfam	1124	1223
IPR021109	Peptidase_aspartic_dom_sf	Gene3D	647	781
IPR021109	Peptidase_aspartic_dom_sf	SUPERFAMILY	653	761
IPR016197	Chromo-like_dom_sf	SUPERFAMILY	1673	1752

No CAZYmes available for this sequence

External Links

No external refs found!