LOC_Os01g01960.1

Description : SIN3-like 3

Gene families : OG_01_0003302 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003302_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g01960.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g01960.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_178
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_67

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003712	transcription coregulator activity	None	Extended
MF	GO:0003714	transcription corepressor activity	ISM	GOs from InterProScan
BP	GO:0006355	regulation of DNA-templated transcription	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036600	PAH_sf	Gene3D	1	37
IPR036600	PAH_sf	Gene3D	240	313
IPR003822	PAH	ProSiteProfiles	49	119
IPR013194	HDAC_interact_dom	Pfam	386	478
IPR003822	PAH	ProSiteProfiles	243	311
IPR013194	HDAC_interact_dom	SMART	384	484
IPR036600	PAH_sf	Gene3D	47	120
IPR003822	PAH	Pfam	264	308
IPR003822	PAH	Pfam	1	36
IPR003822	PAH	Pfam	72	116
IPR003822	PAH	ProSiteProfiles	1	39
IPR036600	PAH_sf	SUPERFAMILY	48	118
IPR036600	PAH_sf	SUPERFAMILY	1	40
IPR036600	PAH_sf	SUPERFAMILY	245	310
IPR039774	Sin3-like	PANTHER	1	1317
IPR031693	Sin3_C	Pfam	1038	1286

No CAZYmes available for this sequence

External Links

No external refs found!