LOC_Os01g03530.1

Description : Cupredoxin superfamily protein

Gene families : OG_01_0004586 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004586_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g03530.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g03530.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_253
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_320

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005507	copper ion binding	ISM	GOs from InterProScan
MF	GO:0016491	oxidoreductase activity	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR008972	Cupredoxin	SUPERFAMILY	234	353
IPR002355	Cu_oxidase_Cu_BS	ProSitePatterns	563	574
IPR011707	Cu-oxidase-like_N	Pfam	146	222
IPR001117	Cu-oxidase_2nd	Pfam	279	353
IPR008972	Cupredoxin	SUPERFAMILY	65	223
IPR008972	Cupredoxin	Gene3D	223	402
IPR008972	Cupredoxin	Gene3D	41	219
IPR045087	Cu-oxidase_fam	PANTHER	31	577
IPR008972	Cupredoxin	SUPERFAMILY	411	578
IPR008972	Cupredoxin	Gene3D	403	582
IPR011706	Cu-oxidase_C	Pfam	437	577

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
AA1	358	583	3.2e-17	101	535

External Links

No external refs found!