1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os01g04330.1

LOC_Os01g04330.1


Description : EF hand calcium-binding protein family


Gene families : OG_01_0012578 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012578_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g04330.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g04330.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_46
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_23


Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 113 125
IPR002048 EF_hand_dom Pfam 103 165
IPR002048 EF_hand_dom Pfam 27 91
IPR002048 EF_hand_dom SMART 67 95
IPR002048 EF_hand_dom SMART 140 168
IPR002048 EF_hand_dom SMART 104 132
IPR002048 EF_hand_dom SMART 27 55
IPR002048 EF_hand_dom ProSiteProfiles 23 58
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 76 88
IPR002048 EF_hand_dom CDD 27 92
IPR002048 EF_hand_dom ProSiteProfiles 100 135
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 36 48
IPR002048 EF_hand_dom ProSiteProfiles 63 98
IPR011992 EF-hand-dom_pair SUPERFAMILY 26 167
IPR002048 EF_hand_dom CDD 104 165
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 149 161
IPR002048 EF_hand_dom ProSiteProfiles 136 171

No CAZYmes available for this sequence

No external refs found!