LOC_Os01g05420.1

Description : Transcription elongation factor (TFIIS) family protein

Gene families : OG_01_0008454 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008454_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g05420.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g05420.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_178
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_20

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009742	brassinosteroid mediated signaling pathway	ISM	GOs from InterProScan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032784	regulation of DNA-templated transcription elongation	ISM	GOs from InterProScan
BP	GO:0043401	steroid hormone mediated signaling pathway	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR017923	TFIIS_N	Pfam	358	403
IPR044204	IWS1/2	PANTHER	2	533
IPR035441	TFIIS/LEDGF_dom_sf	Gene3D	264	409
IPR035441	TFIIS/LEDGF_dom_sf	SUPERFAMILY	316	406
IPR017923	TFIIS_N	ProSiteProfiles	323	406

No CAZYmes available for this sequence

External Links

No external refs found!