LOC_Os01g05470.1

Description : XH/XS domain-containing protein

Gene families : OG_01_0007341 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007341_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g05470.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g05470.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_160
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_43

Type	GO Term	Name	Evidence	Source
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0006346	DNA methylation-dependent heterochromatin formation	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031047	regulatory ncRNA-mediated gene silencing	ISM	GOs from InterProScan
BP	GO:0031048	regulatory ncRNA-mediated heterochromatin formation	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0031507	heterochromatin formation	None	Extended
BP	GO:0040029	epigenetic regulation of gene expression	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0045814	negative regulation of gene expression, epigenetic	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070828	heterochromatin organization	None	Extended
BP	GO:0071824	protein-DNA complex organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080188	gene silencing by RNA-directed DNA methylation	ISM	GOs from InterProScan
BP	GO:0140718	facultative heterochromatin formation	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR038588	XS_domain_sf	Gene3D	175	346
IPR045177	FDM1-5/IDN2	PANTHER	22	699
IPR005379	FDM1-5/IDN2_XH	Pfam	567	696
IPR005381	Znf-XS_domain	Pfam	75	118
IPR005380	XS_domain	Pfam	179	291
IPR005380	XS_domain	CDD	182	290

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os01g05470.1

Expression Profile

Co-expression Networks

Functional Annotation