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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0003585 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003585_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g10800.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g10800.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_147 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_152 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0008270 | zinc ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 47 | 212 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 628 | 740 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 213 | 331 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 573 | 621 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 372 | 417 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 674 | 717 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 774 | 822 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 261 | 295 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 160 | 194 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 235 | 260 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 263 | 293 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 163 | 192 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 649 | 671 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 850 | 873 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 475 | 504 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 445 | 473 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 138 | 156 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 473 | 507 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 574 | 608 |
| IPR032867 | DYW_dom | Pfam | 949 | 1072 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 442 | 472 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 428 | 525 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 332 | 422 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 677 | 703 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 576 | 610 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 777 | 811 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 163 | 196 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 445 | 474 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 375 | 408 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 475 | 508 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 263 | 296 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 372 | 406 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 530 | 627 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 793 | 973 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 675 | 705 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 141 | 933 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 775 | 809 |
No CAZYmes available for this sequence
| No external refs found! |