LOC_Os01g15020.1

Description : TOPLESS-related 2

Gene families : OG_01_0000290 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000290_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g15020.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g15020.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_356
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_189

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006355	regulation of DNA-templated transcription	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR019775	WD40_repeat_CS	ProSitePatterns	596	610
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	741	958
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	526	667
IPR036322	WD40_repeat_dom_sf	SUPERFAMILY	400	946
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	961	1099
IPR001680	WD40_rpt	Pfam	910	942
IPR001680	WD40_rpt	Pfam	439	475
IPR006594	LisH	SMART	4	36
IPR001680	WD40_rpt	ProSiteProfiles	441	476
IPR001680	WD40_rpt	ProSiteProfiles	335	377
IPR019775	WD40_repeat_CS	ProSitePatterns	462	476
IPR006595	CTLH_C	SMART	34	92
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	322	525
IPR027728	Topless_fam	PANTHER	1	1129
IPR006594	LisH	ProSiteProfiles	4	36
IPR036322	WD40_repeat_dom_sf	SUPERFAMILY	323	427
IPR011047	Quinoprotein_ADH-like_supfam	SUPERFAMILY	964	1089
IPR001680	WD40_rpt	SMART	389	428
IPR001680	WD40_rpt	SMART	477	518
IPR001680	WD40_rpt	SMART	567	609
IPR001680	WD40_rpt	SMART	904	943
IPR001680	WD40_rpt	SMART	329	368
IPR001680	WD40_rpt	SMART	434	475
IPR001680	WD40_rpt	SMART	521	564
IPR001680	WD40_rpt	SMART	993	1035
IPR001680	WD40_rpt	SMART	1058	1090
IPR001680	WD40_rpt	SMART	861	901
IPR001680	WD40_rpt	SMART	821	858
IPR006595	CTLH_C	ProSiteProfiles	34	92
IPR001680	WD40_rpt	ProSiteProfiles	577	618
IPR001680	WD40_rpt	ProSiteProfiles	911	952

No CAZYmes available for this sequence

External Links

No external refs found!