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  5. LOC_Os01g15460.1

LOC_Os01g15460.1


Description : Zinc finger C-x8-C-x5-C-x3-H type family protein


Gene families : OG_01_0006777 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006777_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g15460.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g15460.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_267
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_32


Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000571 Znf_CCCH ProSiteProfiles 353 381
IPR000571 Znf_CCCH SMART 307 334
IPR000571 Znf_CCCH SMART 59 86
IPR000571 Znf_CCCH SMART 108 135
IPR000571 Znf_CCCH SMART 153 180
IPR000571 Znf_CCCH SMART 353 380
IPR036855 Znf_CCCH_sf SUPERFAMILY 62 87
IPR036855 Znf_CCCH_sf SUPERFAMILY 354 383
IPR000571 Znf_CCCH ProSiteProfiles 59 87
IPR036855 Znf_CCCH_sf SUPERFAMILY 312 335
IPR036855 Znf_CCCH_sf SUPERFAMILY 111 137
IPR000571 Znf_CCCH Pfam 357 380
IPR000571 Znf_CCCH Pfam 309 334
IPR000571 Znf_CCCH Pfam 156 180
IPR000571 Znf_CCCH Pfam 61 86
IPR000571 Znf_CCCH Pfam 111 135
IPR000571 Znf_CCCH ProSiteProfiles 108 136
IPR036855 Znf_CCCH_sf SUPERFAMILY 154 180
IPR000571 Znf_CCCH ProSiteProfiles 307 335
IPR000571 Znf_CCCH ProSiteProfiles 153 181

No CAZYmes available for this sequence

No external refs found!