LOC_Os01g15860.1

Description : pre-mRNA splicing factor-related

Gene families : OG_01_0006361 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006361_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g15860.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g15860.1	No neighbors in network
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_14

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	ISM	GOs from InterProScan
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR011990	TPR-like_helical_dom_sf	Gene3D	269	413
IPR011990	TPR-like_helical_dom_sf	Gene3D	696	870
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	421	503
IPR045075	Syf1-like	PANTHER	697	885
IPR045075	Syf1-like	PANTHER	25	696
IPR011990	TPR-like_helical_dom_sf	Gene3D	414	695
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	283	487
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	498	696
IPR003107	HAT	SMART	618	650
IPR003107	HAT	SMART	735	767
IPR003107	HAT	SMART	799	831
IPR003107	HAT	SMART	352	381
IPR003107	HAT	SMART	285	317
IPR003107	HAT	SMART	443	472
IPR003107	HAT	SMART	550	582
IPR003107	HAT	SMART	701	733
IPR003107	HAT	SMART	410	442
IPR003107	HAT	SMART	652	683
IPR003107	HAT	SMART	319	351
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	694	857
IPR010491	PRP1_N	Pfam	33	182

No CAZYmes available for this sequence

External Links

No external refs found!