LOC_Os01g18850.1

Description : squamosa promoter binding protein-like 1

Gene families : OG_01_0002885 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002885_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g18850.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g18850.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_329
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_174

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	GOs from InterProScan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036770	Ankyrin_rpt-contain_sf	Gene3D	570	746
IPR036770	Ankyrin_rpt-contain_sf	SUPERFAMILY	594	742
IPR004333	SBP_dom	ProSiteProfiles	104	181
IPR044817	SBP-like	PANTHER	5	862
IPR036893	SBP_sf	Gene3D	98	168
IPR004333	SBP_dom	Pfam	107	180
IPR036893	SBP_sf	SUPERFAMILY	105	184

No CAZYmes available for this sequence

External Links

No external refs found!