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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0019371 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0019371_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.4G044700.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.4G044700.1 | No neighbors in network |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_9 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0008270 | zinc ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 450 | 480 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 103 | 237 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 179 | 641 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 481 | 515 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 432 | 548 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 383 | 415 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 454 | 483 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 281 | 314 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 483 | 516 |
| IPR032867 | DYW_dom | Pfam | 655 | 779 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 278 | 322 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 480 | 527 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 383 | 427 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 279 | 313 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 556 | 579 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 253 | 276 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 354 | 379 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 331 | 431 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 241 | 330 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 380 | 414 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 552 | 586 |
No CAZYmes available for this sequence
| No external refs found! |