Sevir.4G044800.1

Description : Pentatricopeptide repeat (PPR) superfamily protein

Gene families : OG_01_0012973 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012973_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.4G044800.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.4G044800.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_118
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_90

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002885	Pentatricopeptide_rpt	Pfam	113	159
IPR002885	Pentatricopeptide_rpt	Pfam	416	462
IPR002885	Pentatricopeptide_rpt	Pfam	314	352
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	10	44
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	214	248
IPR045215	PPR_prot_At1g15510	PANTHER	1	597
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	315	349
IPR002885	Pentatricopeptide_rpt	Pfam	85	112
IPR002885	Pentatricopeptide_rpt	Pfam	491	515
IPR002885	Pentatricopeptide_rpt	Pfam	216	239
IPR002885	Pentatricopeptide_rpt	Pfam	189	210
IPR002885	Pentatricopeptide_rpt	Pfam	12	40
IPR011990	TPR-like_helical_dom_sf	Gene3D	164	268
IPR011990	TPR-like_helical_dom_sf	Gene3D	279	369
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	113	147
IPR002885	Pentatricopeptide_rpt	TIGRFAM	86	113
IPR002885	Pentatricopeptide_rpt	TIGRFAM	12	40
IPR002885	Pentatricopeptide_rpt	TIGRFAM	115	148
IPR002885	Pentatricopeptide_rpt	TIGRFAM	317	351
IPR002885	Pentatricopeptide_rpt	TIGRFAM	216	249
IPR002885	Pentatricopeptide_rpt	TIGRFAM	491	519
IPR002885	Pentatricopeptide_rpt	TIGRFAM	418	451
IPR011990	TPR-like_helical_dom_sf	Gene3D	46	163
IPR011990	TPR-like_helical_dom_sf	Gene3D	430	594
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	416	450

No CAZYmes available for this sequence

External Links

No external refs found!