LOC_Os01g21940.1

Description : transducin family protein / WD-40 repeat family protein

Gene families : OG_01_0006778 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006778_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g21940.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g21940.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_261
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_20

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001680	WD40_rpt	ProSiteProfiles	226	255
IPR001680	WD40_rpt	ProSiteProfiles	264	305
IPR001680	WD40_rpt	ProSiteProfiles	307	348
IPR006594	LisH	ProSiteProfiles	11	43
IPR006595	CTLH_C	SMART	45	97
IPR045184	SMU1	PANTHER	8	517
IPR001680	WD40_rpt	Pfam	221	246
IPR001680	WD40_rpt	Pfam	300	337
IPR001680	WD40_rpt	Pfam	344	381
IPR001680	WD40_rpt	Pfam	267	295
IPR001680	WD40_rpt	ProSiteProfiles	349	390
IPR006594	LisH	SMART	11	43
IPR001680	WD40_rpt	ProSiteProfiles	484	517
IPR020472	G-protein_beta_WD-40_rep	PRINTS	368	382
IPR020472	G-protein_beta_WD-40_rep	PRINTS	233	247
IPR020472	G-protein_beta_WD-40_rep	PRINTS	283	297
IPR006595	CTLH_C	ProSiteProfiles	45	97
IPR019775	WD40_repeat_CS	ProSitePatterns	368	382
IPR036322	WD40_repeat_dom_sf	SUPERFAMILY	211	516
IPR001680	WD40_rpt	SMART	257	296
IPR001680	WD40_rpt	SMART	477	516
IPR001680	WD40_rpt	SMART	299	339
IPR001680	WD40_rpt	SMART	432	474
IPR001680	WD40_rpt	SMART	207	246
IPR001680	WD40_rpt	SMART	384	430
IPR001680	WD40_rpt	SMART	342	381
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	194	517

No CAZYmes available for this sequence

External Links

No external refs found!