LOC_Os01g25530.1

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG_01_0008218 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008218_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g25530.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g25530.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_308
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_196

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR045215	PPR_prot_At1g15510	PANTHER	59	195
IPR045215	PPR_prot_At1g15510	PANTHER	183	799
IPR002885	Pentatricopeptide_rpt	Pfam	415	463
IPR002885	Pentatricopeptide_rpt	Pfam	618	665
IPR002885	Pentatricopeptide_rpt	Pfam	516	557
IPR002885	Pentatricopeptide_rpt	TIGRFAM	519	553
IPR002885	Pentatricopeptide_rpt	TIGRFAM	656	681
IPR002885	Pentatricopeptide_rpt	TIGRFAM	621	654
IPR002885	Pentatricopeptide_rpt	TIGRFAM	418	451
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	435	781
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	618	652
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	517	551
IPR011990	TPR-like_helical_dom_sf	Gene3D	273	365
IPR011990	TPR-like_helical_dom_sf	Gene3D	173	272
IPR011990	TPR-like_helical_dom_sf	Gene3D	15	166
IPR011990	TPR-like_helical_dom_sf	Gene3D	370	466
IPR011990	TPR-like_helical_dom_sf	Gene3D	590	802
IPR011990	TPR-like_helical_dom_sf	Gene3D	467	583
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	416	450
IPR002885	Pentatricopeptide_rpt	Pfam	317	339

No CAZYmes available for this sequence

External Links

No external refs found!