Sevir.4G047600.1

Description : chromatin remodeling factor CHD3 (PICKLE)

Gene families : OG_01_0004201 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004201_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.4G047600.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.4G047600.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_158
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_20

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	ISM	GOs from InterProScan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0071824	protein-DNA complex organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	ISM	GOs from InterProScan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR016197	Chromo-like_dom_sf	SUPERFAMILY	187	244
IPR000953	Chromo/chromo_shadow_dom	ProSiteProfiles	103	183
IPR019786	Zinc_finger_PHD-type_CS	ProSitePatterns	58	98
IPR038718	SNF2-like_sf	Gene3D	269	520
IPR001650	Helicase_C	SMART	630	714
IPR013083	Znf_RING/FYVE/PHD	Gene3D	49	103
IPR009462	CHD_II_SANT-like	SMART	907	1056
IPR001650	Helicase_C	Pfam	601	714
IPR000953	Chromo/chromo_shadow_dom	SMART	191	246
IPR000953	Chromo/chromo_shadow_dom	SMART	102	172
IPR000330	SNF2_N	Pfam	296	577
IPR009462	CHD_II_SANT-like	Pfam	924	1053
IPR023780	Chromo_domain	Pfam	105	153
IPR023780	Chromo_domain	Pfam	194	243
IPR009463	DUF1087	Pfam	834	891
IPR016197	Chromo-like_dom_sf	SUPERFAMILY	70	178
IPR027417	P-loop_NTPase	SUPERFAMILY	262	511
IPR019787	Znf_PHD-finger	ProSiteProfiles	55	101
IPR027417	P-loop_NTPase	Gene3D	521	745
IPR001650	Helicase_C	ProSiteProfiles	604	764
IPR009463	DUF1087	SMART	830	895
IPR001965	Znf_PHD	SMART	57	99
IPR000953	Chromo/chromo_shadow_dom	ProSiteProfiles	193	253
IPR027417	P-loop_NTPase	SUPERFAMILY	513	786
IPR014001	Helicase_ATP-bd	ProSiteProfiles	289	476
IPR014001	Helicase_ATP-bd	SMART	273	488

No CAZYmes available for this sequence

External Links

No external refs found!

Sevir.4G047600.1

Expression Profile

Co-expression Networks

Functional Annotation