LOC_Os01g27040.1

Description : chromatin-remodeling protein 11

Gene families : OG_01_0003736 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003736_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g27040.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g27040.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_328
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_34

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003682	chromatin binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	GOs from InterProScan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	ISM	GOs from InterProScan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0031491	nucleosome binding	ISM	GOs from InterProScan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0071824	protein-DNA complex organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	ISM	GOs from InterProScan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR044754	Isw1/2_DEXHc	CDD	228	448
IPR001650	Helicase_C	Pfam	534	646
IPR017884	SANT_dom	ProSiteProfiles	877	929
IPR001005	SANT/Myb	CDD	881	925
IPR001650	Helicase_C	SMART	562	646
IPR036306	ISWI_HAND-dom_sf	SUPERFAMILY	794	879
IPR036306	ISWI_HAND-dom_sf	Gene3D	783	877
IPR009057	Homeobox-like_sf	SUPERFAMILY	933	1055
IPR027417	P-loop_NTPase	SUPERFAMILY	207	446
IPR009057	Homeobox-like_sf	SUPERFAMILY	882	931
IPR027417	P-loop_NTPase	SUPERFAMILY	448	730
IPR014001	Helicase_ATP-bd	SMART	227	419
IPR027417	P-loop_NTPase	Gene3D	452	744
IPR001650	Helicase_C	ProSiteProfiles	536	687
IPR038718	SNF2-like_sf	Gene3D	232	447
IPR000330	SNF2_N	Pfam	244	511
IPR001005	SANT/Myb	SMART	979	1041
IPR001005	SANT/Myb	SMART	878	927
IPR014001	Helicase_ATP-bd	ProSiteProfiles	243	408
IPR015194	ISWI_HAND-dom	Pfam	795	874
IPR015195	SLIDE	Pfam	935	1045

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os01g27040.1

Expression Profile

Co-expression Networks

Functional Annotation