LOC_Os01g27520.1

Description : Class II aminoacyl-tRNA and biotin synthetases superfamily protein

Gene families : OG_01_0014616 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014616_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g27520.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g27520.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_293
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_19

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	ISM	GOs from InterProScan
MF	GO:0004816	asparagine-tRNA ligase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	ISM	GOs from InterProScan
BP	GO:0006421	asparaginyl-tRNA aminoacylation	ISM	GOs from InterProScan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR004522	Asn-tRNA-ligase	TIGRFAM	27	558
IPR004365	NA-bd_OB_tRNA	Pfam	43	119
IPR045864	aa-tRNA-synth_II/BPL/LPL	Gene3D	131	558
IPR006195	aa-tRNA-synth_II	ProSiteProfiles	318	549
IPR012340	NA-bd_OB-fold	SUPERFAMILY	37	123
IPR002312	Asp/Asn-tRNA-synth_IIb	PRINTS	474	490
IPR002312	Asp/Asn-tRNA-synth_IIb	PRINTS	300	312
IPR002312	Asp/Asn-tRNA-synth_IIb	PRINTS	316	329
IPR002312	Asp/Asn-tRNA-synth_IIb	PRINTS	514	528
IPR004364	Aa-tRNA-synt_II	Pfam	142	202
IPR009068	uS15_NS1_RNA-bd_sf	SUPERFAMILY	232	273
IPR004364	Aa-tRNA-synt_II	Pfam	290	552
IPR000738	WHEP-TRS_dom	ProSiteProfiles	224	280
IPR004522	Asn-tRNA-ligase	Hamap	28	559
IPR045864	aa-tRNA-synth_II/BPL/LPL	SUPERFAMILY	140	554

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os01g27520.1

Expression Profile

Co-expression Networks

Functional Annotation