1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os01g27770.1

LOC_Os01g27770.1


Description : dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative


Gene families : OG_01_0007940 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007940_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g27770.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g27770.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_181
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_167


Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity ISM GOs from InterProScan
MF GO:0003855 3-dehydroquinate dehydratase activity ISM GOs from InterProScan
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR022893 Shikimate_DH_fam PANTHER 181 507
IPR013708 Shikimate_DH-bd_N Pfam 247 327
IPR006151 Shikm_DH/Glu-tRNA_Rdtase Pfam 366 424
IPR001381 DHquinase_I CDD 1 235
IPR036291 NAD(P)-bd_dom_sf SUPERFAMILY 360 503
IPR013785 Aldolase_TIM Gene3D 150 241
IPR001381 DHquinase_I Pfam 1 95
IPR001381 DHquinase_I Pfam 180 233
IPR013785 Aldolase_TIM Gene3D 1 97
IPR022893 Shikimate_DH_fam PANTHER 1 92

No CAZYmes available for this sequence

No external refs found!