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  5. LOC_Os01g28680.1

LOC_Os01g28680.1


Description : transducin family protein / WD-40 repeat family protein


Gene families : OG_01_0003606 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003606_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g28680.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g28680.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_367
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_69


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001680 WD40_rpt ProSiteProfiles 289 330
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 93 338
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 339 465
IPR001680 WD40_rpt ProSiteProfiles 243 276
IPR001680 WD40_rpt Pfam 408 443
IPR001680 WD40_rpt Pfam 283 321
IPR001680 WD40_rpt Pfam 359 402
IPR001680 WD40_rpt Pfam 244 276
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 110 450
IPR001680 WD40_rpt SMART 405 444
IPR001680 WD40_rpt SMART 95 131
IPR001680 WD40_rpt SMART 236 276
IPR001680 WD40_rpt SMART 135 176
IPR001680 WD40_rpt SMART 194 233
IPR001680 WD40_rpt SMART 357 402
IPR001680 WD40_rpt SMART 282 321

No CAZYmes available for this sequence

No external refs found!