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  5. LOC_Os01g31800.1

LOC_Os01g31800.1


Description : histone H2A 12


Gene families : OG_01_0000335 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000335_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g31800.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g31800.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_199
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_111


Type GO Term Name Evidence Source
CC GO:0000786 nucleosome ISM GOs from InterProScan
MF GO:0003677 DNA binding ISM GOs from InterProScan
MF GO:0046982 protein heterodimerization activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR009072 Histone-fold Gene3D 14 144
IPR032458 Histone_H2A_CS ProSitePatterns 35 41
IPR009072 Histone-fold SUPERFAMILY 19 139
IPR002119 Histone_H2A PANTHER 10 154
IPR002119 Histone_H2A CDD 19 131
IPR007125 Histone_H2A/H2B/H3 Pfam 20 102
IPR002119 Histone_H2A PRINTS 113 131
IPR002119 Histone_H2A PRINTS 71 84
IPR002119 Histone_H2A PRINTS 27 49
IPR002119 Histone_H2A PRINTS 85 99
IPR002119 Histone_H2A PRINTS 56 71
IPR002119 Histone_H2A SMART 16 136
IPR032454 Histone_H2A_C Pfam 105 138

No CAZYmes available for this sequence

No external refs found!