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  5. LOC_Os01g32120.1

LOC_Os01g32120.1


Description : Calcium-binding EF-hand family protein


Gene families : OG_01_0033925 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0033925_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g32120.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g32120.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_49
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_199


Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002048 EF_hand_dom SMART 64 92
IPR002048 EF_hand_dom SMART 100 128
IPR002048 EF_hand_dom SMART 140 168
IPR002048 EF_hand_dom SMART 176 204
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 109 121
IPR002048 EF_hand_dom ProSiteProfiles 136 171
IPR011992 EF-hand-dom_pair SUPERFAMILY 47 202
IPR002048 EF_hand_dom ProSiteProfiles 96 131
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 185 197
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 73 85
IPR002048 EF_hand_dom CDD 140 202
IPR002048 EF_hand_dom ProSiteProfiles 60 95
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 149 161
IPR002048 EF_hand_dom Pfam 138 201
IPR002048 EF_hand_dom Pfam 65 125
IPR002048 EF_hand_dom ProSiteProfiles 172 207

No CAZYmes available for this sequence

No external refs found!