LOC_Os01g32750.1

Description : TATA BOX ASSOCIATED FACTOR II 59

Gene families : OG_01_0005548 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005548_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g32750.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g32750.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_178
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_126

Type	GO Term	Name	Evidence	Source
CC	GO:0000123	histone acetyltransferase complex	None	Extended
CC	GO:0000124	SAGA complex	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005667	transcription regulator complex	None	Extended
CC	GO:0005669	transcription factor TFIID complex	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	ISM	GOs from InterProScan
BP	GO:0006367	transcription initiation at RNA polymerase II promoter	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016251	RNA polymerase II general transcription initiation factor activity	ISM	GOs from InterProScan
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
CC	GO:0031248	protein acetyltransferase complex	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
CC	GO:0046695	SLIK (SAGA-like) complex	ISM	GOs from InterProScan
MF	GO:0046982	protein heterodimerization activity	ISM	GOs from InterProScan
MF	GO:0046983	protein dimerization activity	None	Extended
CC	GO:0070461	SAGA-type complex	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0090575	RNA polymerase II transcription regulator complex	None	Extended
MF	GO:0140223	general transcription initiation factor activity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1902493	acetyltransferase complex	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1905368	peptidase complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR004823	TAF_TATA-bd_Histone-like_dom	SMART	2	68
IPR009072	Histone-fold	SUPERFAMILY	1	65
IPR011442	TAF6_C	Pfam	263	350
IPR037796	TAF6	PANTHER	1	541
IPR009072	Histone-fold	Gene3D	1	66
IPR004823	TAF_TATA-bd_Histone-like_dom	Pfam	1	65
IPR016024	ARM-type_fold	SUPERFAMILY	200	392

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os01g32750.1

Expression Profile

Co-expression Networks

Functional Annotation