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  5. LOC_Os01g39134.1

LOC_Os01g39134.1


Description : Calcium-binding EF hand family protein


Gene families : OG_01_0002248 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002248_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g39134.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g39134.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_14
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_218


Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 359 371
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 320 332
IPR002048 EF_hand_dom ProSiteProfiles 307 342
IPR002048 EF_hand_dom ProSiteProfiles 260 295
IPR002048 EF_hand_dom Pfam 311 373
IPR002048 EF_hand_dom ProSiteProfiles 227 256
IPR011992 EF-hand-dom_pair SUPERFAMILY 147 253
IPR002048 EF_hand_dom Pfam 273 284
IPR002048 EF_hand_dom SMART 311 339
IPR002048 EF_hand_dom SMART 185 213
IPR002048 EF_hand_dom SMART 264 292
IPR002048 EF_hand_dom SMART 350 378
IPR002048 EF_hand_dom SMART 225 253
IPR002048 EF_hand_dom ProSiteProfiles 346 381
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 194 206
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 273 285
IPR011992 EF-hand-dom_pair SUPERFAMILY 227 394
IPR002048 EF_hand_dom ProSiteProfiles 181 216

No CAZYmes available for this sequence

No external refs found!