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  5. Sevir.4G056100.1

Sevir.4G056100.1


Description : CCCH-type zinc fingerfamily protein with RNA-binding domain


Gene families : OG_01_0002026 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002026_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.4G056100.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.4G056100.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_98
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_103


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0046872 metal ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000571 Znf_CCCH SMART 157 183
IPR036855 Znf_CCCH_sf SUPERFAMILY 159 182
IPR000504 RRM_dom ProSiteProfiles 228 301
IPR000504 RRM_dom Pfam 230 286
IPR039171 Cwc2/Slt11 PANTHER 1 466
IPR035979 RBD_domain_sf SUPERFAMILY 220 317
IPR000571 Znf_CCCH ProSiteProfiles 157 184
IPR000504 RRM_dom SMART 229 297
IPR032297 Torus Pfam 135 194
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 217 344

No CAZYmes available for this sequence

No external refs found!