LOC_Os01g43050.1

Description : centromere protein C

Gene families : OG_01_0005977 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005977_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g43050.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g43050.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_207
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_206

Type	GO Term	Name	Evidence	Source
CC	GO:0000776	kinetochore	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0019237	centromeric DNA binding	ISM	GOs from InterProScan
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051382	kinetochore assembly	ISM	GOs from InterProScan
BP	GO:0051383	kinetochore organization	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0070925	organelle assembly	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0099080	supramolecular complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140694	non-membrane-bounded organelle assembly	None	Extended
MF	GO:1990837	sequence-specific double-stranded DNA binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR028386	CENP-C/Mif2/cnp3	PANTHER	44	620
IPR028386	CENP-C/Mif2/cnp3	PANTHER	611	836

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os01g43050.1

Expression Profile

Co-expression Networks

Functional Annotation