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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0014774 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014774_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g48140.1 | No neighbors in network |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g48140.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_113 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 310 | 344 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 140 | 185 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 239 | 288 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 137 | 171 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 240 | 274 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 353 | 518 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 102 | 268 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 309 | 338 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 203 | 232 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 275 | 309 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 383 | 410 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 277 | 310 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 208 | 240 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 140 | 172 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 415 | 446 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 242 | 276 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 312 | 346 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 415 | 444 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 384 | 409 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 412 | 446 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 269 | 352 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 205 | 239 |
No CAZYmes available for this sequence
| No external refs found! |