LOC_Os01g49270.1

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG_01_0006952 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006952_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g49270.1	No neighbors in network
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g49270.1
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_52

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	ISM	GOs from InterProScan
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR045075	Syf1-like	PANTHER	554	685
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	95	185
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	235	439
IPR003107	HAT	SMART	482	514
IPR003107	HAT	SMART	387	423
IPR003107	HAT	SMART	624	658
IPR003107	HAT	SMART	125	159
IPR003107	HAT	SMART	46	78
IPR003107	HAT	SMART	586	622
IPR003107	HAT	SMART	516	550
IPR003107	HAT	SMART	269	304
IPR003107	HAT	SMART	91	123
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	23	74
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	465	663
IPR045075	Syf1-like	PANTHER	15	358
IPR011990	TPR-like_helical_dom_sf	Gene3D	458	685
IPR011990	TPR-like_helical_dom_sf	Gene3D	376	457
IPR045075	Syf1-like	PANTHER	380	546
IPR011990	TPR-like_helical_dom_sf	Gene3D	22	192

No CAZYmes available for this sequence

External Links

No external refs found!