LOC_Os01g50320.1

Description : SWAP (Suppressor-of-White-APricot)/surp domain-containing protein

Gene families : OG_01_0004208 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004208_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g50320.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g50320.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_178
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_90

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR000061	Surp	Pfam	159	207
IPR000061	Surp	Pfam	359	408
IPR035967	SWAP/Surp_sf	Gene3D	344	417
IPR035967	SWAP/Surp_sf	SUPERFAMILY	147	207
IPR000061	Surp	ProSiteProfiles	360	402
IPR035967	SWAP/Surp_sf	Gene3D	153	208
IPR000061	Surp	ProSiteProfiles	160	202
IPR035967	SWAP/Surp_sf	SUPERFAMILY	346	413
IPR000061	Surp	SMART	358	411
IPR000061	Surp	SMART	158	211
IPR019147	SWAP_N_domain	Pfam	2	123
IPR040397	SWAP	PANTHER	1	876
IPR019147	SWAP_N_domain	SMART	1	125

No CAZYmes available for this sequence

External Links

No external refs found!