LOC_Os01g52110.1

Description : CHY-type/CTCHY-type/RING-type Zinc finger protein

Gene families : OG_01_0003524 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003524_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g52110.1	No neighbors in network
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g52110.1
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_140

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR039512	RCHY1_zinc-ribbon	Pfam	244	300
IPR008913	Znf_CHY	Pfam	61	142
IPR008913	Znf_CHY	ProSiteProfiles	54	130
IPR001841	Znf_RING	ProSiteProfiles	197	240
IPR037275	Znf_CTCHY_sf	SUPERFAMILY	133	190
IPR001841	Znf_RING	SMART	197	239
IPR017921	Znf_CTCHY	ProSiteProfiles	132	196
IPR013083	Znf_RING/FYVE/PHD	Gene3D	191	242
IPR037274	Znf_CHY_sf	SUPERFAMILY	58	132
IPR001841	Znf_RING	Pfam	196	239

No CAZYmes available for this sequence

External Links

No external refs found!