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  5. LOC_Os01g55170.1

LOC_Os01g55170.1


Description : RNA-binding protein


Gene families : OG_01_0012628 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012628_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g55170.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g55170.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_291
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_32


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
CC GO:0005634 nucleus ISM GOs from InterProScan
BP GO:0006396 RNA processing ISM GOs from InterProScan
CC GO:1990904 ribonucleoprotein complex ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 170 274
IPR002344 Lupus_La PRINTS 151 164
IPR002344 Lupus_La PRINTS 94 111
IPR002344 Lupus_La PRINTS 120 135
IPR002344 Lupus_La PRINTS 173 189
IPR036390 WH_DNA-bd_sf SUPERFAMILY 82 174
IPR035979 RBD_domain_sf SUPERFAMILY 171 270
IPR000504 RRM_dom Pfam 181 253
IPR036388 WH-like_DNA-bd_sf Gene3D 80 169
IPR006630 La_HTH Pfam 91 148
IPR000504 RRM_dom ProSiteProfiles 179 269
IPR006630 La_HTH ProSiteProfiles 81 172
IPR045180 La_dom_prot PANTHER 19 396
IPR006630 La_HTH SMART 85 165

No CAZYmes available for this sequence

No external refs found!