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  5. LOC_Os01g55590.1

LOC_Os01g55590.1


Description : AMP-dependent synthetase and ligase family protein


Gene families : OG_01_0003355 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003355_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g55590.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g55590.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_188
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_221


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR025110 AMP-bd_C Pfam 461 546
IPR000873 AMP-dep_Synth/Lig_com Pfam 65 451
IPR020459 AMP-binding PRINTS 184 195
IPR020459 AMP-binding PRINTS 196 204
IPR045851 AMP-bd_C_sf Gene3D 448 558
IPR042099 ANL_N_sf Gene3D 58 444
IPR020845 AMP-binding_CS ProSitePatterns 189 200

No CAZYmes available for this sequence

No external refs found!