LOC_Os01g56310.1

Description : Radical SAM superfamily protein

Gene families : OG_01_0004991 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004991_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g56310.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g56310.1	No neighbors in network
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_374

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006631	fatty acid metabolic process	None	Extended
BP	GO:0006633	fatty acid biosynthetic process	None	Extended
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009106	lipoate metabolic process	None	Extended
BP	GO:0009107	lipoate biosynthetic process	ISM	GOs from InterProScan
CC	GO:0009507	chloroplast	ISM	GOs from InterProScan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016782	transferase activity, transferring sulphur-containing groups	None	Extended
MF	GO:0016783	sulfurtransferase activity	None	Extended
MF	GO:0016992	lipoate synthase activity	ISM	GOs from InterProScan
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044272	sulfur compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0051536	iron-sulfur cluster binding	ISM	GOs from InterProScan
MF	GO:0051539	4 iron, 4 sulfur cluster binding	ISM	GOs from InterProScan
MF	GO:0051540	metal cluster binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072330	monocarboxylic acid biosynthetic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR027526	Lipoyl_synth_chlpt	Hamap	6	363
IPR003698	Lipoyl_synth	Hamap	64	357
IPR013785	Aldolase_TIM	Gene3D	116	318
IPR006638	Elp3/MiaA/NifB-like_rSAM	SMART	122	326
IPR007197	rSAM	Pfam	127	281
IPR003698	Lipoyl_synth	SFLD	59	352
IPR003698	Lipoyl_synth	PANTHER	9	360
IPR007197	rSAM	ProSiteProfiles	115	331
IPR007197	rSAM	SFLD	59	352
IPR003698	Lipoyl_synth	TIGRFAM	60	355
IPR003698	Lipoyl_synth	PIRSF	32	364

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os01g56310.1

Expression Profile

Co-expression Networks

Functional Annotation