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  5. LOC_Os01g60350.1

LOC_Os01g60350.1


Description : synaptotagmin A


Gene families : OG_01_0004789 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004789_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g60350.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g60350.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_294
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_131


Type GO Term Name Evidence Source
MF GO:0008289 lipid binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000008 C2_dom ProSiteProfiles 377 496
IPR039010 Synaptotagmin_SMP Pfam 67 226
IPR035892 C2_domain_sf Gene3D 396 514
IPR000008 C2_dom ProSiteProfiles 226 363
IPR000008 C2_dom PRINTS 288 301
IPR000008 C2_dom PRINTS 261 273
IPR000008 C2_dom PRINTS 310 318
IPR031468 SMP_LBD ProSiteProfiles 67 250
IPR035892 C2_domain_sf Gene3D 240 385
IPR035892 C2_domain_sf SUPERFAMILY 237 369
IPR035892 C2_domain_sf SUPERFAMILY 395 513
IPR000008 C2_dom Pfam 396 498
IPR000008 C2_dom Pfam 244 320
IPR045050 Synaptotagmin_plant PANTHER 1 514
IPR000008 C2_dom SMART 245 359
IPR000008 C2_dom SMART 396 495

No CAZYmes available for this sequence

No external refs found!