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  5. LOC_Os01g61160.1

LOC_Os01g61160.1


Description : laccase 12


Gene families : OG_01_0000046 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000046_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g61160.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g61160.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_163
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_70


Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding ISM GOs from InterProScan
MF GO:0016491 oxidoreductase activity ISM GOs from InterProScan
BP GO:0046274 lignin catabolic process ISM GOs from InterProScan
CC GO:0048046 apoplast ISM GOs from InterProScan
MF GO:0052716 hydroquinone:oxygen oxidoreductase activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011707 Cu-oxidase-like_N Pfam 33 147
IPR034285 CuRO_2_LCC CDD 160 307
IPR008972 Cupredoxin Gene3D 373 567
IPR008972 Cupredoxin SUPERFAMILY 20 172
IPR033138 Cu_oxidase_CS ProSitePatterns 525 545
IPR011706 Cu-oxidase_C Pfam 416 549
IPR045087 Cu-oxidase_fam PANTHER 6 567
IPR008972 Cupredoxin Gene3D 28 157
IPR017761 Laccase TIGRFAM 24 567
IPR002355 Cu_oxidase_Cu_BS ProSitePatterns 530 541
IPR008972 Cupredoxin Gene3D 158 347
IPR008972 Cupredoxin SUPERFAMILY 349 567
IPR001117 Cu-oxidase_2nd Pfam 159 309
IPR008972 Cupredoxin SUPERFAMILY 154 346
IPR034289 CuRO_3_LCC CDD 411 550
IPR034288 CuRO_1_LCC CDD 29 145
HMM Family HMM Length Query Length e-Value Query Start Query End
AA1 358 568 1.4e-131 43 542
No external refs found!