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  5. LOC_Os01g62220.1

LOC_Os01g62220.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0017844 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0017844_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g62220.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g62220.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_328
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_143


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 8 37
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 238 272
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 5 39
IPR002885 Pentatricopeptide_rpt Pfam 237 284
IPR002885 Pentatricopeptide_rpt Pfam 136 184
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 106 136
IPR002885 Pentatricopeptide_rpt Pfam 104 133
IPR002885 Pentatricopeptide_rpt TIGRFAM 240 273
IPR002885 Pentatricopeptide_rpt TIGRFAM 139 173
IPR002885 Pentatricopeptide_rpt TIGRFAM 108 137
IPR011990 TPR-like_helical_dom_sf Gene3D 304 436
IPR011990 TPR-like_helical_dom_sf Gene3D 191 303
IPR011990 TPR-like_helical_dom_sf Gene3D 64 190
IPR011990 TPR-like_helical_dom_sf Gene3D 1 63
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 137 171

No CAZYmes available for this sequence

No external refs found!