LOC_Os01g62230.1

Description : Histone superfamily protein

Gene families : OG_01_0000076 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000076_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g62230.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g62230.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_200
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_95

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
MF	GO:0046982	protein heterodimerization activity	ISM	GOs from InterProScan
MF	GO:0046983	protein dimerization activity	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR009072	Histone-fold	Gene3D	2	139
IPR000558	Histone_H2B	PANTHER	8	138
IPR009072	Histone-fold	SUPERFAMILY	23	139
IPR007125	Histone_H2A/H2B/H3	Pfam	5	115
IPR000558	Histone_H2B	ProSitePatterns	107	129
IPR000558	Histone_H2B	SMART	42	138
IPR000558	Histone_H2B	PRINTS	93	110
IPR000558	Histone_H2B	PRINTS	123	136
IPR000558	Histone_H2B	PRINTS	110	123
IPR000558	Histone_H2B	PRINTS	71	91
IPR000558	Histone_H2B	PRINTS	52	70

No CAZYmes available for this sequence

External Links

No external refs found!