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Description : pumilio 1
Gene families : OG_01_0009848 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009848_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g62650.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g62650.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_276 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_85 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 869 | 905 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 906 | 941 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 942 | 977 |
| IPR011989 | ARM-like | Gene3D | 705 | 1050 |
| IPR033712 | Pumilio_RNA-bd | CDD | 720 | 1041 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 761 | 796 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 725 | 760 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 797 | 832 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 978 | 1019 |
| IPR016024 | ARM-type_fold | SUPERFAMILY | 708 | 1042 |
| IPR012940 | NABP | Pfam | 310 | 724 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 729 | 763 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 844 | 867 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 873 | 908 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 911 | 943 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 801 | 834 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 766 | 798 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 946 | 980 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 992 | 1019 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 833 | 868 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 984 | 1019 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 869 | 904 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 906 | 941 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 942 | 977 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 725 | 760 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 797 | 832 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 833 | 868 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 761 | 796 |
| IPR033133 | PUM-HD | ProSiteProfiles | 705 | 1045 |
No CAZYmes available for this sequence
| No external refs found! |