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  5. LOC_Os01g63400.1

LOC_Os01g63400.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0012449 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012449_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g63400.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g63400.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_303
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_30


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 156 205
IPR002885 Pentatricopeptide_rpt Pfam 648 695
IPR002885 Pentatricopeptide_rpt Pfam 472 521
IPR002885 Pentatricopeptide_rpt Pfam 578 625
IPR002885 Pentatricopeptide_rpt Pfam 402 451
IPR002885 Pentatricopeptide_rpt Pfam 262 311
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 473 507
IPR002885 Pentatricopeptide_rpt TIGRFAM 546 578
IPR002885 Pentatricopeptide_rpt TIGRFAM 336 359
IPR002885 Pentatricopeptide_rpt TIGRFAM 266 299
IPR002885 Pentatricopeptide_rpt TIGRFAM 651 684
IPR002885 Pentatricopeptide_rpt TIGRFAM 616 650
IPR002885 Pentatricopeptide_rpt TIGRFAM 194 228
IPR002885 Pentatricopeptide_rpt TIGRFAM 581 614
IPR002885 Pentatricopeptide_rpt TIGRFAM 229 263
IPR002885 Pentatricopeptide_rpt TIGRFAM 370 403
IPR002885 Pentatricopeptide_rpt TIGRFAM 300 334
IPR002885 Pentatricopeptide_rpt TIGRFAM 476 509
IPR002885 Pentatricopeptide_rpt TIGRFAM 440 474
IPR002885 Pentatricopeptide_rpt TIGRFAM 405 438
IPR002885 Pentatricopeptide_rpt TIGRFAM 510 544
IPR002885 Pentatricopeptide_rpt TIGRFAM 160 192
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 263 297
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 649 683
IPR002885 Pentatricopeptide_rpt Pfam 531 569
IPR011990 TPR-like_helical_dom_sf Gene3D 25 147
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 403 437
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 157 191
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 227 262
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 614 648
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 508 542
IPR002885 Pentatricopeptide_rpt Pfam 367 392
IPR002885 Pentatricopeptide_rpt Pfam 329 358
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 298 332
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 543 577
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 438 472
IPR011990 TPR-like_helical_dom_sf Gene3D 258 361
IPR011990 TPR-like_helical_dom_sf Gene3D 148 257
IPR011990 TPR-like_helical_dom_sf Gene3D 432 502
IPR011990 TPR-like_helical_dom_sf Gene3D 362 431
IPR002885 Pentatricopeptide_rpt Pfam 229 256
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 298 571
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 578 612
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 333 367
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 192 226
IPR011990 TPR-like_helical_dom_sf Gene3D 503 592
IPR011990 TPR-like_helical_dom_sf Gene3D 593 702

No CAZYmes available for this sequence

No external refs found!