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  5. LOC_Os01g65840.1

LOC_Os01g65840.1


Description : Pentatricopeptide repeat (PPR-like) superfamily protein


Gene families : OG_01_0013225 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013225_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g65840.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g65840.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_115
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_148


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 315 548
IPR002885 Pentatricopeptide_rpt Pfam 347 393
IPR002885 Pentatricopeptide_rpt Pfam 246 293
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 184 218
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 89 123
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 19 268
IPR011990 TPR-like_helical_dom_sf Gene3D 48 150
IPR011990 TPR-like_helical_dom_sf Gene3D 151 214
IPR002885 Pentatricopeptide_rpt TIGRFAM 250 282
IPR002885 Pentatricopeptide_rpt TIGRFAM 94 119
IPR002885 Pentatricopeptide_rpt TIGRFAM 122 147
IPR002885 Pentatricopeptide_rpt TIGRFAM 350 383
IPR002885 Pentatricopeptide_rpt TIGRFAM 186 214
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 257 445
IPR002885 Pentatricopeptide_rpt Pfam 320 346
IPR002885 Pentatricopeptide_rpt Pfam 186 214
IPR002885 Pentatricopeptide_rpt Pfam 153 178
IPR002885 Pentatricopeptide_rpt Pfam 94 119
IPR002885 Pentatricopeptide_rpt Pfam 218 245
IPR002885 Pentatricopeptide_rpt Pfam 420 445
IPR002885 Pentatricopeptide_rpt Pfam 122 148
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 246 280
IPR011990 TPR-like_helical_dom_sf Gene3D 215 310
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 347 381

No CAZYmes available for this sequence

No external refs found!